Can I link two stores to one QuickBooks Online account?

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No, you cannot connect multiple Shopify stores to the same QuickBooks Online account at one time. Authenticating a second Shopify store to a QuickBooks Online account will cause the first Shopify store to become disconnected from QuickBooks Online. If you wish to have multiple Shopify stores export to your QuickBooks Online account, you’ll need to connect one at a time to run an export with a selected date range.

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