Can I make items in a bundle sale exempt from coupons?

No, unfortunately, you can't restrict the use of coupons on a case by case basis through Product Bundles. You should be aware that if you create a coupon for your store, customers will be able to use it on items purchased in a bundle sale as well.

Discount codes are applied in the checkout process.  Once the customer leaves the cart page of your store, we no longer have control.

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